Chocolate Banana Muffins with Oats and Dark Cocoa

These chocolate banana muffins are a tasty, wholesome way to start the day. They deliver the moist, rich texture of a good chocolate cake but use less sugar than many breakfast muffins and are loaded with nourishing ingredients.

Several iced chocolate banana breakfast muffins on a wood table with chocolate chips scattered all around them.

What makes these chocolate banana muffins great:

  • Quick and easy to make, freeze well, and can be prepared ahead
  • Lower in added sugar thanks to applesauce and abundant bananas
  • Made with fiber-rich ingredients like whole wheat and wheat bran
  • Easy to adapt to vegan, eggless, or gluten-free diets
  • Soft, moist, and fudgy with clear chocolate-banana flavor that isn’t hidden by excess sugar
  • Filling enough to keep you satisfied for hours
  • A delicious way to use overripe bananas
  • Kid- and adult-approved for chocolate lovers

I’ve always loved sweet breakfasts. Fresh fruit and yogurt, peanut butter and honey on toast, chocolate banana smoothies, muffins — I’ll happily reserve savory breakfasts for another meal. My family feels the same, which is why these chocolate banana muffins have been a household favorite for years.

If you like chocolate for breakfast, this recipe is for you. For a fun twist, swirl peanut butter into the tops before baking to make chocolate banana peanut butter muffins.

xo

-Rebecca

Chocolate banana muffins with a peanut butter swirl stacked on a table with a peanut butter covered knife laying next to them.

Ingredients Needed to Prepare this Recipe

These fudgy muffins use simple, wholesome ingredients but deliver intense chocolate and banana flavor. Instead of relying on a lot of added sugar, this recipe uses applesauce, Greek yogurt, and two cups of mashed bananas to keep the muffins moist and naturally sweet.

Ingredients at a glance:

All of the ingredients you need to make these healthy chocolate banana breakfast muffins displayed on a wood table.
  • All-purpose flour: A small amount prevents the muffins from becoming too dense.
  • Whole wheat flour: Adds heartiness and fiber; balanced here by applesauce, yogurt, and bananas so the muffins stay moist.
  • Wheat bran: Boosts fiber and adds pleasant texture.
  • Cinnamon: A subtle complement to the chocolate and banana.
  • Baking powder and baking soda: Help the muffins rise and create a tender crumb.
  • Salt: Enhances flavor; adjust to taste if you prefer less salt.
  • Brown sugar: Adds moisture and deeper flavor than white sugar, allowing for less overall sweetness.
  • Butter: Just a couple of tablespoons keeps the muffins rich without being heavy because applesauce replaces most of the fat.
  • Unsweetened applesauce: Replaces some sugar and most of the butter while keeping the muffins moist.
  • Eggs: Provide structure and richness; see substitutions for egg-free or vegan options.
  • Vanilla extract: Use real vanilla for best flavor.
  • Bananas: Two cups mashed (about 4 medium very ripe bananas) for natural sweetness and moisture.
  • Plain, unsweetened Greek yogurt: Adds moisture, protein, and reacts with baking soda for a light texture.
  • Melted chocolate: Bittersweet (around 70% cacao) gives deep chocolate flavor; semi-sweet can be used for a sweeter result.
A muffin tray filled with chocolate banana muffins, some covered with chocolate glaze and some unglazed.

Additions and Substitutions

  • Egg-free: Replace each egg with one flax “egg” (1 tbsp ground flax + 2½ tbsp water). For three eggs, use 3 tbsp flax meal + 7½ tbsp water.
  • Vegan: Use flax eggs and an unsweetened, Greek-style vegan yogurt. If you omit yogurt, add an extra ½ cup mashed banana; muffins will be slightly denser and may not rise as high.
  • Gluten-free: Use a 1:1 measure-for-measure gluten-free flour and swap wheat bran for gluten-free oat bran or ground flaxseed meal.
  • Chocolate chips: Stir 1 cup mini chocolate chips into the batter for chocolate chip chocolate banana muffins.
  • Flavor variations: Try a teaspoon of almond or coconut extract, swap butter for coconut oil, or add a pinch of instant espresso to deepen the chocolate flavor.
  • Peanut butter variation: Melt 1/3 cup peanut butter and drizzle it on top of each muffin before baking, then swirl gently for chocolate banana peanut butter muffins.

Make These Muffins in 4 Easy Steps

Someone using a wire whisk to mix the dry ingredients for these muffins in a wood bowl.

1. Combine all dry ingredients in a bowl and whisk until evenly mixed.

Looking down into the bowl of an electric mixer while it mixes brown sugar, melted butter, applesauce, eggs, and vanilla.

2. In a separate bowl, beat brown sugar, melted butter, applesauce, eggs, and vanilla until combined (1–2 minutes by mixer or beat vigorously by hand).

You can also mix by hand with a whisk if preferred.

Looking down into the bowl of a stand mixer while it mixes mashed banana, chocolate, and yogurt into muffin batter.

3. Add mashed bananas, yogurt, and melted chocolate to the wet mixture and beat just until combined.

Someone using a wooden spoon to stir the dry ingredients into chocolate banana muffin batter.

4. Fold the dry ingredients into the wet mixture, stirring just until smooth. Avoid over-mixing.

A muffin tin containing tulip paper liners that have been filled with chocolate banana muffin batter.

Divide the batter among paper-lined muffin cups and bake.

Tip for perfect domed muffin tops:

Start baking at 400°F for 5 minutes, then reduce the oven to 350°F for the remaining time. The initial high heat helps the muffins rise and creates a rounded top.

For Double Chocolate Banana Muffins, Make a Simple Chocolate Glaze

These muffins are delicious without a glaze, but a quick chocolate glaze adds an extra layer of chocolate that many will enjoy.

The glaze comes together in minutes: whisk together cocoa powder, powdered sugar, a pinch of salt, milk, and vanilla until smooth.

Someone using a wire whisk to mix up a simple chocolate glaze for double chocolate banana muffins.

When muffins are cool, spoon the glaze over each one. Tulip liners work well to hold the glaze in place.

Someone using a gold spoon to drizzle chocolate glaze over the tops of chocolate banana breakfast muffins.

How to Store These Muffins

Make a batch on the weekend and keep some for the week. These muffins freeze and refrigerate well.

  • Store airtight at room temperature up to 3 days or in the refrigerator up to 5 days.
  • Freeze unglazed muffins for up to 3 months. Wrap each muffin individually, place in a zip-top bag or airtight container, and thaw at room temperature before glazing and serving.

Recipe FAQs

What makes these muffins healthy?

These muffins are relatively healthier than many baked goods because they’re lower in added sugar, use minimal saturated fat, and include whole grains, fruit, and yogurt for fiber and protein. Personal dietary priorities determine what feels “healthy” to you.

What’s the difference between a muffin and a cupcake?

Cupcakes are generally sweeter, lighter in texture, and topped with frosting. Muffins are usually less sweet and heartier. That said, these chocolate banana muffins are close enough to cupcakes that they work for breakfast, snacks, lunches, or dessert.

Tips for Success

  • Don’t over-mix after adding the dry ingredients; stir just until combined.
  • Avoid over-baking — test with a toothpick and use an oven thermometer if needed.
  • Use very ripe bananas for best flavor and natural sweetness.

More chocolate breakfast recipes

Need more reasons to enjoy chocolate in the morning? Try another chocolate muffin or breakfast treat.

  • Chocolate Chip Muffins
  • Chocolate Blackberry Muffins
  • Vegan Banana Chocolate Muffins with Maple Tahini Glaze
  • Double Chocolate Muffins {Extra Fudgy with Vanilla Glaze}
Healthy chocolate banana muffins on a table with chocolate chips scattered around them.

If you give this recipe a try, let me know! Rate the recipe and leave a comment.

Happy baking!

📖 Recipe

Someone using a fork to cut a bite from a health chocolate banana muffin.

Healthy Chocolate Banana Breakfast Muffins

Yield:
12 large or 24 small muffins
Prep Time:
20 minutes
Cook Time:
35 minutes
Total Time:
55 minutes

These chocolate banana breakfast muffins are a delicious, more wholesome option for the morning. They’re moist and chocolatey but use less added sugar than many breakfast muffins thanks to applesauce, yogurt, and plenty of mashed bananas.

Ingredients

  • ½ cup (60 grams) all-purpose flour
  • ¾ cup (85 grams) whole wheat flour
  • ½ cup (32 grams) wheat bran
  • 1 teaspoon cinnamon
  • 1 ¼ teaspoon (5 grams) baking powder
  • ¼ teaspoon (1.5 grams) baking soda
  • ¾ teaspoon (4.5 grams) table salt
  • ¾ cup (160 grams) brown sugar
  • 2 tablespoons (29 grams) butter, melted (I used salted)
  • ⅓ cup (85 grams) unsweetened applesauce
  • 3 large eggs, at room temperature
  • 1 teaspoon pure vanilla extract
  • 2 cups (454 grams) mashed very ripe bananas (about 4 medium)
  • ¼ cup (57 grams) plain unsweetened Greek yogurt
  • 5 ounces (142 grams) chopped semi-sweet or bittersweet chocolate, melted and cooled

For the Chocolate Glaze (optional):

  • ⅓ cup (28 grams) cocoa powder
  • ½ cup (57 grams) powdered sugar
  • a pinch of salt
  • 3–4 tablespoons (43–57 grams) milk
  • 1 teaspoon pure vanilla extract

Instructions

  1. Preheat oven to 400°F (204°C). Line a muffin tin with 12 large tulip liners or use regular liners in two pans for smaller muffins.
  2. Whisk both flours, wheat bran, cinnamon, baking powder, baking soda, and salt in a medium bowl.
  3. In another bowl, beat brown sugar, melted butter, applesauce, eggs, and vanilla until combined (1–2 minutes by mixer). Add mashed bananas, yogurt, and melted chocolate and beat just until combined.
  4. Fold the dry ingredients into the wet mixture with a spoon or spatula until the batter is smooth. Do not over-mix.
  5. Fill each muffin cup about ¾ full. Bake at 400°F for 5 minutes, then reduce oven to 350°F (176°C). Bake large muffins for an additional 28–32 minutes or small muffins for 12–15 minutes. A toothpick inserted into the center should come out without raw batter.
  6. Transfer muffins to a wire rack and cool completely before glazing.

To Make the Glaze:

  1. Whisk cocoa powder, powdered sugar, and a pinch of salt in a bowl. Add 3 tablespoons of milk and vanilla, whisk until smooth. Add more milk if you want a thinner glaze; adjust salt to taste.
  2. Drizzle or spoon glaze over completely cooled muffins.

Notes

  • Peanut butter variation: Melt ⅓ cup creamy peanut butter, drizzle over muffins before baking, and swirl gently.
  • Salt: Salt enhances flavor; reduce if you prefer less.
  • Muffin size: Using large tulip liners yields 12 large muffins; standard liners yield 24 small muffins.
  • Storage: Store airtight up to 3 days at room temperature or up to 5 days refrigerated. Freeze unglazed muffins up to 3 months and thaw before glazing.
  • Nutrition: Nutrition values are based on one large muffin topped with 1 tablespoon of glaze.
Nutrition Information:

Yield: 12
Serving Size: 1 muffin

Amount Per Serving:
Calories: 275Total Fat: 10gSaturated Fat: 4gTrans Fat: 0gUnsaturated Fat: 6 gCholesterol: 42mgSodium: 254mgCarbohydrates: 42gFiber: 7gSugar: 22gProtein: 6g

© Rebecca Blackwell
Category: Muffin Recipes

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